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Class: ExperimentalConditions

Biological and experimental conditions applicable to all trials in the dataset. Covers organism identity, treatment, assay design, and environmental parameters.

  • NOTE: this is an abstract class and should not be instantiated directly

URI: BeStMeta:ExperimentalConditions

 classDiagram
    class ExperimentalConditions
    click ExperimentalConditions href "../ExperimentalConditions/"
      ExperimentalConditions : experiment





        ExperimentalConditions --> "1" Experiment : experiment
        click Experiment href "../Experiment/"



      ExperimentalConditions : experiment_notes

      ExperimentalConditions : manipulation





        ExperimentalConditions --> "0..1" Manipulation : manipulation
        click Manipulation href "../Manipulation/"



      ExperimentalConditions : subject





        ExperimentalConditions --> "1..*" Subject : subject
        click Subject href "../Subject/"

Slots

Name Cardinality and Range Description Inheritance
subject 1..*
Subject		 Indicates if a single animals or multiple animals are used, it could be 1 for single-animal models or well plate studie, >1 for mult--animal rodent studies direct
experiment 1
Experiment		 The experimental setup and environment for this dataset's trials. direct
manipulation 0..1
Manipulation		 Any intervention applied to the subjects. Omitted when no treatment or exposure was used. direct
experiment_notes 0..1
String		 Free-text notes on the overall experimental conditions. direct

Usages

used by used in type used
VTADataset experimental_conditions range ExperimentalConditions

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/bestmeta/schema

Mappings

Mapping Type Mapped Value
self BeStMeta:ExperimentalConditions
native BeStMeta:ExperimentalConditions

LinkML Source

Direct

name: ExperimentalConditions
description: Biological and experimental conditions applicable to all trials in the
  dataset. Covers organism identity, treatment, assay design, and environmental parameters.
from_schema: https://w3id.org/bestmeta/schema
abstract: true
slots:
- subject
- experiment
- manipulation
- experiment_notes

Induced

name: ExperimentalConditions
description: Biological and experimental conditions applicable to all trials in the
  dataset. Covers organism identity, treatment, assay design, and environmental parameters.
from_schema: https://w3id.org/bestmeta/schema
abstract: true
attributes:
  subject:
    name: subject
    description: 'Indicates if a single animals or multiple animals are used, it could
      be 1 for single-animal models or well plate studie, >1 for mult--animal rodent
      studies                    '
    from_schema: https://w3id.org/bestmeta/schema
    rank: 1000
    owner: ExperimentalConditions
    domain_of:
    - ExperimentalConditions
    range: Subject
    required: true
    multivalued: true
    inlined: true
  experiment:
    name: experiment
    description: The experimental setup and environment for this dataset's trials.
    from_schema: https://w3id.org/bestmeta/schema
    rank: 1000
    owner: ExperimentalConditions
    domain_of:
    - ExperimentalConditions
    range: Experiment
    required: true
  manipulation:
    name: manipulation
    description: Any intervention applied to the subjects. Omitted when no treatment
      or exposure was used.
    from_schema: https://w3id.org/bestmeta/schema
    rank: 1000
    owner: ExperimentalConditions
    domain_of:
    - ExperimentalConditions
    range: Manipulation
    required: false
  experiment_notes:
    name: experiment_notes
    description: Free-text notes on the overall experimental conditions.
    from_schema: https://w3id.org/bestmeta/schema
    rank: 1000
    owner: ExperimentalConditions
    domain_of:
    - ExperimentalConditions
    range: string
    required: false